STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPP1Secreted phosphoprotein 1. (272 aa)    
Predicted Functional Partners:
ITGAV
Integrin subunit alpha V.
   
 0.965
ENSODEP00000005624
annotation not available
    
 0.963
ENSODEP00000009397
annotation not available
    
 0.962
ITGA9
Integrin subunit alpha 9.
   
 0.952
ENSODEP00000022403
annotation not available
   
 0.936
IRF7
Interferon regulatory factor 7.
    
 0.927
ITGB5
Integrin subunit beta 5.
    
 0.915
ITGA8
Integrin subunit alpha 8.
   
 0.912
ITGA4
Integrin subunit alpha 4.
   
 0.908
FAM20C
FAM20C golgi associated secretory pathway kinase.
    
 0.906
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.