STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCARF1Scavenger receptor class F member 1. (791 aa)    
Predicted Functional Partners:
TNFRSF13C
TNF receptor superfamily member 13C.
    
 0.801
COL3A1
Collagen type III alpha 1 chain.
     
 0.776
TNFRSF17
TNF receptor superfamily member 17.
    
 0.773
IL33
Interleukin 33.
    
 0.767
TTR
Transthyretin.
   
  
 0.766
ADAMTS7
ADAM metallopeptidase with thrombospondin type 1 motif 7.
   
  
 0.765
FOLR1
Folate receptor alpha.
      
 0.761
TMEM19
Transmembrane protein 19.
      
 0.761
INO80D
INO80 complex subunit D.
      
 0.761
SLC30A5
Solute carrier family 30 member 5.
      
 0.761
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.