STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTN2Reticulon 2. (471 aa)    
Predicted Functional Partners:
BACE1
Beta-secretase 1.
   
 0.941
BACE2
Beta-secretase 2.
   
 0.904
VTA1
Vesicle trafficking 1.
    
   0.886
GCH1
GTP cyclohydrolase 1.
    
   0.886
REEP6
Receptor accessory protein 6.
    
 
 0.883
Rtn4
annotation not available
  
 
 
0.849
ENSODEP00000019360
annotation not available
    
   0.829
BLVRB
Biliverdin reductase B.
   
 
 0.782
ENSODEP00000006683
annotation not available
   
 
 0.782
CTSE
Cathepsin E.
    
 0.782
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.