STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RDH14Retinol dehydrogenase 14. (341 aa)    
Predicted Functional Partners:
MRE11
MRE11 homolog, double strand break repair nuclease.
   
 0.900
FDX1
Ferredoxin 1.
  
 0.887
ENSODEP00000022634
annotation not available
  
 0.887
STOML1
Stomatin like 1.
  
 0.882
OXSM
3-oxoacyl-ACP synthase, mitochondrial.
  
 0.871
RDH8
Retinol dehydrogenase 8.
  
0.860
MED14
Mediator complex subunit 14.
    
 0.857
MCAT
malonyl-CoA-acyl carrier protein transacylase.
  
 0.856
KDM6A
Lysine demethylase 6A.
  
 0.849
KDM6B
Lysine demethylase 6B.
  
 0.849
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.