ENSODEP00000013213 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000013213

annotation not available (454 aa)

Predicted Functional Partners:

IKBKG

0.993

TAB1

0.992

TRAF6

0.991

MYD88

0.990

MAP2K4

0.986

TAB2

0.982

TAB3

0.982

MAP2K3

0.979

MAP2K7

0.979

TNF

0.977

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000013213	IKBKG	ENSODEP00000013213	ENSODEP00000007932	annotation not available	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.993
ENSODEP00000013213	MAP2K3	ENSODEP00000013213	ENSODEP00000010160	annotation not available	Mitogen-activated protein kinase kinase 3.	0.979
ENSODEP00000013213	MAP2K4	ENSODEP00000013213	ENSODEP00000001775	annotation not available	Mitogen-activated protein kinase kinase 4.	0.986
ENSODEP00000013213	MAP2K7	ENSODEP00000013213	ENSODEP00000017588	annotation not available	Mitogen-activated protein kinase kinase 7.	0.979
ENSODEP00000013213	MYD88	ENSODEP00000013213	ENSODEP00000011150	annotation not available	MYD88 innate immune signal transduction adaptor.	0.990
ENSODEP00000013213	TAB1	ENSODEP00000013213	ENSODEP00000021470	annotation not available	TGF-beta activated kinase 1 (MAP3K7) binding protein 1.	0.992
ENSODEP00000013213	TAB2	ENSODEP00000013213	ENSODEP00000003579	annotation not available	TGF-beta activated kinase 1 (MAP3K7) binding protein 2.	0.982
ENSODEP00000013213	TAB3	ENSODEP00000013213	ENSODEP00000017406	annotation not available	TGF-beta activated kinase 1 (MAP3K7) binding protein 3.	0.982
ENSODEP00000013213	TNF	ENSODEP00000013213	ENSODEP00000024408	annotation not available	Tumor necrosis factor.	0.977
ENSODEP00000013213	TRAF6	ENSODEP00000013213	ENSODEP00000023288	annotation not available	TNF receptor associated factor 6.	0.991
IKBKG	ENSODEP00000013213	ENSODEP00000007932	ENSODEP00000013213	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	annotation not available	0.993
IKBKG	MAP2K3	ENSODEP00000007932	ENSODEP00000010160	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	Mitogen-activated protein kinase kinase 3.	0.641
IKBKG	MAP2K4	ENSODEP00000007932	ENSODEP00000001775	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	Mitogen-activated protein kinase kinase 4.	0.661
IKBKG	MAP2K7	ENSODEP00000007932	ENSODEP00000017588	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	Mitogen-activated protein kinase kinase 7.	0.653
IKBKG	MYD88	ENSODEP00000007932	ENSODEP00000011150	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	MYD88 innate immune signal transduction adaptor.	0.986
IKBKG	TAB1	ENSODEP00000007932	ENSODEP00000021470	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	TGF-beta activated kinase 1 (MAP3K7) binding protein 1.	0.996
IKBKG	TAB2	ENSODEP00000007932	ENSODEP00000003579	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	TGF-beta activated kinase 1 (MAP3K7) binding protein 2.	0.996
IKBKG	TAB3	ENSODEP00000007932	ENSODEP00000017406	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	TGF-beta activated kinase 1 (MAP3K7) binding protein 3.	0.996
IKBKG	TNF	ENSODEP00000007932	ENSODEP00000024408	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	Tumor necrosis factor.	0.992
IKBKG	TRAF6	ENSODEP00000007932	ENSODEP00000023288	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	TNF receptor associated factor 6.	0.996