STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000013227annotation not available (195 aa)    
Predicted Functional Partners:
HOXA9
Homeobox A9.
   
  
 0.896
HOXA7
Homeobox A7.
   
 
 0.879
PBX3
PBX homeobox 3.
    
 
 0.805
PBX1
PBX homeobox 1.
    
 
 0.805
PBX2
PBX homeobox 2.
    
 
 0.805
HOXD10
Homeobox D10.
   
 
0.720
HOXB5
Homeobox B5.
   
 
 0.655
HOXA3
Homeobox A3.
   
 
 0.640
MEIS2
Meis homeobox 2.
    
 
 0.556
MEIS1
Meis homeobox 1.
    
 
 0.556
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.