STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM42Tripartite motif containing 42. (723 aa)    
Predicted Functional Partners:
ANKFY1
Ankyrin repeat and FYVE domain containing 1.
    
  0.820
ENSODEP00000002311
annotation not available
    
 
 0.810
ENSODEP00000025656
annotation not available
    
 
 0.810
KDM6A
Lysine demethylase 6A.
    
 0.801
KDM6B
Lysine demethylase 6B.
    
 0.801
ENSODEP00000014132
annotation not available
    
  0.786
ENSODEP00000016345
annotation not available
    
  0.786
FBXL19
F-box and leucine rich repeat protein 19.
    
  0.786
KDM2A
Lysine demethylase 2A.
    
  0.786
Tonsl
Tonsoku like, DNA repair protein.
    
  0.746
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.