STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB20RAB20, member RAS oncogene family. (156 aa)    
Predicted Functional Partners:
ENSODEP00000020619
annotation not available
   
 0.988
RBSN
Rabenosyn, RAB effector.
   
 0.952
APPL1
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.
    
 
 0.949
APPL2
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.
    
 
 0.949
PIK3C3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.934
GAPVD1
GTPase activating protein and VPS9 domains 1.
    
 0.910
ANKRD27
Ankyrin repeat domain 27.
    
 0.910
ANKFY1
Ankyrin repeat and FYVE domain containing 1.
    
 0.886
VPS8
VPS8 subunit of CORVET complex.
    
 
 0.865
ALS2
Alsin Rho guanine nucleotide exchange factor ALS2.
    
 0.854
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.