STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZNF638Zinc finger protein 638. (1924 aa)    
Predicted Functional Partners:
MYSM1
Myb like, SWIRM and MPN domains 1.
   
 0.958
ENSODEP00000025351
annotation not available
   
 0.951
ARID4B
AT-rich interaction domain 4B.
   
 0.947
Arid4a
AT-rich interaction domain 4A.
    
 0.911
ENSODEP00000020185
annotation not available
    
 0.911
NIPBL
NIPBL cohesin loading factor.
   
 0.907
SENP6
SUMO specific peptidase 6.
   
 
 0.882
U2SURP
U2 snRNP associated SURP domain containing.
   
    0.876
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.858
KDM6A
Lysine demethylase 6A.
   
 0.832
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.