STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM46Tripartite motif containing 46. (619 aa)    
Predicted Functional Partners:
ANKFY1
Ankyrin repeat and FYVE domain containing 1.
    
  0.820
KDM6A
Lysine demethylase 6A.
    
 0.801
KDM6B
Lysine demethylase 6B.
    
 0.801
ENSODEP00000014132
annotation not available
    
  0.786
ENSODEP00000016345
annotation not available
    
  0.786
FBXL19
F-box and leucine rich repeat protein 19.
    
  0.786
KDM2A
Lysine demethylase 2A.
    
  0.786
Tonsl
Tonsoku like, DNA repair protein.
    
  0.746
ENSODEP00000001869
annotation not available
    
 0.706
RIPK4
Receptor interacting serine/threonine kinase 4.
    
 0.696
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.