STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HVCN1Hydrogen voltage gated channel 1. (265 aa)    
Predicted Functional Partners:
SCN1B
Sodium voltage-gated channel beta subunit 1.
     
 0.822
SCN11A
Sodium voltage-gated channel alpha subunit 11.
     
0.793
SCN3B
Sodium voltage-gated channel beta subunit 3.
     
 0.791
SCN2B
Sodium voltage-gated channel beta subunit 2.
     
 0.787
ENSODEP00000008366
annotation not available
    
 
 0.749
ENSODEP00000011240
annotation not available
     
 0.728
TRPM2
Transient receptor potential cation channel subfamily M member 2.
     
 0.701
ENSODEP00000002736
annotation not available
    
 0.694
ENSODEP00000011533
annotation not available
    
 0.694
ENSODEP00000014033
annotation not available
    
 0.694
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.