RO60 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RO60

Ro60, Y RNA binding protein. (538 aa)

Predicted Functional Partners:

TRIM21

0.930

TRIM58

0.898

ENSODEP00000005564

0.783

ENSODEP00000008879

0.783

ENSODEP00000013590

0.783

ENSODEP00000013782

0.783

TRIM11

0.772

MOG

0.677

RNF39

0.664

ENSODEP00000000970

0.664

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000000970	RO60	ENSODEP00000000970	ENSODEP00000014165	annotation not available	Ro60, Y RNA binding protein.	0.664
ENSODEP00000005564	RO60	ENSODEP00000005564	ENSODEP00000014165	annotation not available	Ro60, Y RNA binding protein.	0.783
ENSODEP00000008879	RO60	ENSODEP00000008879	ENSODEP00000014165	annotation not available	Ro60, Y RNA binding protein.	0.783
ENSODEP00000013590	RO60	ENSODEP00000013590	ENSODEP00000014165	annotation not available	Ro60, Y RNA binding protein.	0.783
ENSODEP00000013782	RO60	ENSODEP00000013782	ENSODEP00000014165	annotation not available	Ro60, Y RNA binding protein.	0.783
MOG	RNF39	ENSODEP00000002544	ENSODEP00000000368	Myelin oligodendrocyte glycoprotein.	Ring finger protein 39.	0.628
MOG	RO60	ENSODEP00000002544	ENSODEP00000014165	Myelin oligodendrocyte glycoprotein.	Ro60, Y RNA binding protein.	0.677
RNF39	MOG	ENSODEP00000000368	ENSODEP00000002544	Ring finger protein 39.	Myelin oligodendrocyte glycoprotein.	0.628
RNF39	RO60	ENSODEP00000000368	ENSODEP00000014165	Ring finger protein 39.	Ro60, Y RNA binding protein.	0.664
RO60	ENSODEP00000000970	ENSODEP00000014165	ENSODEP00000000970	Ro60, Y RNA binding protein.	annotation not available	0.664
RO60	ENSODEP00000005564	ENSODEP00000014165	ENSODEP00000005564	Ro60, Y RNA binding protein.	annotation not available	0.783
RO60	ENSODEP00000008879	ENSODEP00000014165	ENSODEP00000008879	Ro60, Y RNA binding protein.	annotation not available	0.783
RO60	ENSODEP00000013590	ENSODEP00000014165	ENSODEP00000013590	Ro60, Y RNA binding protein.	annotation not available	0.783
RO60	ENSODEP00000013782	ENSODEP00000014165	ENSODEP00000013782	Ro60, Y RNA binding protein.	annotation not available	0.783
RO60	MOG	ENSODEP00000014165	ENSODEP00000002544	Ro60, Y RNA binding protein.	Myelin oligodendrocyte glycoprotein.	0.677
RO60	RNF39	ENSODEP00000014165	ENSODEP00000000368	Ro60, Y RNA binding protein.	Ring finger protein 39.	0.664
RO60	TRIM11	ENSODEP00000014165	ENSODEP00000001446	Ro60, Y RNA binding protein.	Tripartite motif containing 11.	0.772
RO60	TRIM21	ENSODEP00000014165	ENSODEP00000010740	Ro60, Y RNA binding protein.	Tripartite motif containing 21.	0.930
RO60	TRIM58	ENSODEP00000014165	ENSODEP00000000252	Ro60, Y RNA binding protein.	Tripartite motif containing 58.	0.898
TRIM11	RO60	ENSODEP00000001446	ENSODEP00000014165	Tripartite motif containing 11.	Ro60, Y RNA binding protein.	0.772