STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000014514annotation not available (98 aa)    
Predicted Functional Partners:
SNRPG
Small nuclear ribonucleoprotein G.
   
 0.978
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.977
SF3B2
Splicing factor 3b subunit 2.
   
 0.972
ENSODEP00000012133
annotation not available
   
 0.967
CPSF1
Cleavage and polyadenylation specific factor 1.
   
 0.961
SYMPK
Symplekin.
    
 0.959
SF3B3
Splicing factor 3b subunit 3.
   
 0.956
SF3A1
Splicing factor 3a subunit 1.
   
 0.953
WDR82
WD repeat domain 82.
   
 0.953
ENSODEP00000018621
annotation not available
   
 0.950
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.