FMNL3 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FMNL3

Formin like 3. (1015 aa)

Predicted Functional Partners:

ENSODEP00000015195

0.941

ENSODEP00000014156

0.927

ENSODEP00000021414

0.927

ENSODEP00000026039

0.927

ENSODEP00000026242

0.927

ENSODEP00000026747

0.927

RHOV

0.921

FLCN

0.918

RHOU

0.901

ENSODEP00000008436

0.897

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000008436	ENSODEP00000014156	ENSODEP00000008436	ENSODEP00000014156	annotation not available	annotation not available	0.787
ENSODEP00000008436	ENSODEP00000021414	ENSODEP00000008436	ENSODEP00000021414	annotation not available	annotation not available	0.786
ENSODEP00000008436	ENSODEP00000026039	ENSODEP00000008436	ENSODEP00000026039	annotation not available	annotation not available	0.787
ENSODEP00000008436	ENSODEP00000026242	ENSODEP00000008436	ENSODEP00000026242	annotation not available	annotation not available	0.787
ENSODEP00000008436	ENSODEP00000026747	ENSODEP00000008436	ENSODEP00000026747	annotation not available	annotation not available	0.787
ENSODEP00000008436	FMNL3	ENSODEP00000008436	ENSODEP00000014973	annotation not available	Formin like 3.	0.897
ENSODEP00000014156	ENSODEP00000008436	ENSODEP00000014156	ENSODEP00000008436	annotation not available	annotation not available	0.787
ENSODEP00000014156	FMNL3	ENSODEP00000014156	ENSODEP00000014973	annotation not available	Formin like 3.	0.927
ENSODEP00000014156	RHOU	ENSODEP00000014156	ENSODEP00000005772	annotation not available	Ras homolog family member U.	0.666
ENSODEP00000014156	RHOV	ENSODEP00000014156	ENSODEP00000023353	annotation not available	Ras homolog family member V.	0.667
ENSODEP00000015195	FMNL3	ENSODEP00000015195	ENSODEP00000014973	annotation not available	Formin like 3.	0.941
ENSODEP00000021414	ENSODEP00000008436	ENSODEP00000021414	ENSODEP00000008436	annotation not available	annotation not available	0.786
ENSODEP00000021414	FMNL3	ENSODEP00000021414	ENSODEP00000014973	annotation not available	Formin like 3.	0.927
ENSODEP00000021414	RHOU	ENSODEP00000021414	ENSODEP00000005772	annotation not available	Ras homolog family member U.	0.664
ENSODEP00000021414	RHOV	ENSODEP00000021414	ENSODEP00000023353	annotation not available	Ras homolog family member V.	0.665
ENSODEP00000026039	ENSODEP00000008436	ENSODEP00000026039	ENSODEP00000008436	annotation not available	annotation not available	0.787
ENSODEP00000026039	FMNL3	ENSODEP00000026039	ENSODEP00000014973	annotation not available	Formin like 3.	0.927
ENSODEP00000026039	RHOU	ENSODEP00000026039	ENSODEP00000005772	annotation not available	Ras homolog family member U.	0.666
ENSODEP00000026039	RHOV	ENSODEP00000026039	ENSODEP00000023353	annotation not available	Ras homolog family member V.	0.666
ENSODEP00000026242	ENSODEP00000008436	ENSODEP00000026242	ENSODEP00000008436	annotation not available	annotation not available	0.787