STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL25A1Collagen type XXV alpha 1 chain. (664 aa)    
Predicted Functional Partners:
TEP1
Telomerase associated protein 1.
    
 0.918
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.874
ENSODEP00000025351
annotation not available
    
 0.840
ENSODEP00000008465
annotation not available
 
      0.811
TNC
Tenascin C.
    
 0.791
PCOLCE2
Procollagen C-endopeptidase enhancer 2.
    
 0.784
COL6A2
Collagen type VI alpha 2 chain.
   
0.775
TNR
Tenascin R.
    
 0.774
TNN
Tenascin N.
    
 0.765
ENSODEP00000010199
annotation not available
     
0.760
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.