PER3 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PER3

Period circadian regulator 3. (1054 aa)

Predicted Functional Partners:

CRY2

0.998

PER2

0.996

Per1

0.994

ARNTL

0.992

ENSODEP00000004259

0.991

ENSODEP00000016702

0.991

TIMELESS

0.987

CLOCK

0.983

LOC101592056

0.982

ENSODEP00000010526

0.977

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARNTL	CLOCK	ENSODEP00000011409	ENSODEP00000012690	Aryl hydrocarbon receptor nuclear translocator like.	Clock circadian regulator.	0.996
ARNTL	CRY2	ENSODEP00000011409	ENSODEP00000022739	Aryl hydrocarbon receptor nuclear translocator like.	Cryptochrome circadian regulator 2.	0.998
ARNTL	ENSODEP00000004259	ENSODEP00000011409	ENSODEP00000004259	Aryl hydrocarbon receptor nuclear translocator like.	annotation not available	0.994
ARNTL	ENSODEP00000010526	ENSODEP00000011409	ENSODEP00000010526	Aryl hydrocarbon receptor nuclear translocator like.	annotation not available	0.984
ARNTL	ENSODEP00000016702	ENSODEP00000011409	ENSODEP00000016702	Aryl hydrocarbon receptor nuclear translocator like.	annotation not available	0.994
ARNTL	LOC101592056	ENSODEP00000011409	ENSODEP00000018219	Aryl hydrocarbon receptor nuclear translocator like.	annotation not available	0.995
ARNTL	PER2	ENSODEP00000011409	ENSODEP00000011595	Aryl hydrocarbon receptor nuclear translocator like.	Period circadian regulator 2.	0.997
ARNTL	PER3	ENSODEP00000011409	ENSODEP00000016557	Aryl hydrocarbon receptor nuclear translocator like.	Period circadian regulator 3.	0.992
ARNTL	Per1	ENSODEP00000011409	ENSODEP00000024290	Aryl hydrocarbon receptor nuclear translocator like.	annotation not available	0.992
ARNTL	TIMELESS	ENSODEP00000011409	ENSODEP00000008960	Aryl hydrocarbon receptor nuclear translocator like.	Timeless circadian regulator.	0.833
CLOCK	ARNTL	ENSODEP00000012690	ENSODEP00000011409	Clock circadian regulator.	Aryl hydrocarbon receptor nuclear translocator like.	0.996
CLOCK	CRY2	ENSODEP00000012690	ENSODEP00000022739	Clock circadian regulator.	Cryptochrome circadian regulator 2.	0.996
CLOCK	ENSODEP00000004259	ENSODEP00000012690	ENSODEP00000004259	Clock circadian regulator.	annotation not available	0.987
CLOCK	ENSODEP00000010526	ENSODEP00000012690	ENSODEP00000010526	Clock circadian regulator.	annotation not available	0.952
CLOCK	ENSODEP00000016702	ENSODEP00000012690	ENSODEP00000016702	Clock circadian regulator.	annotation not available	0.987
CLOCK	LOC101592056	ENSODEP00000012690	ENSODEP00000018219	Clock circadian regulator.	annotation not available	0.965
CLOCK	PER2	ENSODEP00000012690	ENSODEP00000011595	Clock circadian regulator.	Period circadian regulator 2.	0.989
CLOCK	PER3	ENSODEP00000012690	ENSODEP00000016557	Clock circadian regulator.	Period circadian regulator 3.	0.983
CLOCK	Per1	ENSODEP00000012690	ENSODEP00000024290	Clock circadian regulator.	annotation not available	0.976
CLOCK	TIMELESS	ENSODEP00000012690	ENSODEP00000008960	Clock circadian regulator.	Timeless circadian regulator.	0.833