STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PLEKHH2Pleckstrin homology, MyTH4 and FERM domain containing H2. (1491 aa)    
Predicted Functional Partners:
TGFB1I1
Transforming growth factor beta 1 induced transcript 1.
    
 
 0.769
APBB1IP
Amyloid beta precursor protein binding family B member 1 interacting protein.
    
   0.588
PXN
Paxillin.
    
 
 0.471
LPXN
Leupaxin.
    
 
 0.471
UNC5C
Unc-5 netrin receptor C.
    
 
 0.468
UNC5D
Unc-5 netrin receptor D.
    
 
 0.468
UNC5A
Unc-5 netrin receptor A.
    
 
 0.468
UNC5CL
Unc-5 family C-terminal like.
    
 
 0.468
ENSODEP00000018295
annotation not available
    
   0.453
RAD51B
RAD51 paralog B.
      
 0.432
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.