STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S100A13S100 calcium binding protein A13. (98 aa)    
Predicted Functional Partners:
FGF1
Fibroblast growth factor 1.
    
 
 0.977
SYT2
Synaptotagmin 2.
    
 
 0.960
IL1B
Interleukin 1 beta.
    
 
 0.948
ENSODEP00000023864
annotation not available
    
 
 0.946
FGF16
Fibroblast growth factor 16.
    
 
 0.869
FGF9
Fibroblast growth factor 9.
    
 
 0.869
FGF20
Fibroblast growth factor 20.
    
 
 0.869
ENSODEP00000001270
annotation not available
    
 
 0.815
FGF11
Fibroblast growth factor 11.
    
 
 0.815
FGF10
Fibroblast growth factor 10.
    
 
 0.730
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.