STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000018610annotation not available (117 aa)    
Predicted Functional Partners:
ENSODEP00000024666
annotation not available
   
 0.999
ATG7
Autophagy related 7.
   
 0.992
ENSODEP00000013222
annotation not available
   
 0.991
ATG4A
Autophagy related 4A cysteine peptidase.
   
 0.985
ENSODEP00000012352
annotation not available
   
 0.982
ENSODEP00000014978
annotation not available
   
 0.982
ATG14
Autophagy related 14.
    
 0.981
SQSTM1
Sequestosome 1.
   
 0.973
ATG4C
Autophagy related 4C cysteine peptidase.
   
 0.970
ATG12
Autophagy related 12.
   
 0.969
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.