STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCO1Beta-carotene oxygenase 1. (562 aa)    
Predicted Functional Partners:
RDH12
Retinol dehydrogenase 12.
     
 0.943
ALDH1A2
Aldehyde dehydrogenase 1 family member A2.
  
 
 0.932
RDH10
Retinol dehydrogenase 10.
     
 0.931
DHRS3
Dehydrogenase/reductase 3.
     
 0.927
ENSODEP00000006486
annotation not available
     
 0.926
ENSODEP00000017698
annotation not available
     
 0.923
RDH8
Retinol dehydrogenase 8.
   
 
 0.918
DHRS9
Dehydrogenase/reductase 9.
     
 0.916
SDR16C5
Short chain dehydrogenase/reductase family 16C member 5.
     
 0.910
ALDH1A1
Aldehyde dehydrogenase 1 family member A1.
  
 
 0.889
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.