STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C14orf39Chromosome unknown C14orf39 homolog. (502 aa)    
Predicted Functional Partners:
SYCE1
Synaptonemal complex central element protein 1.
   
  
 0.552
ENSODEP00000014785
annotation not available
      
 0.550
TEX12
Testis expressed 12.
      
 0.540
SYCE3
Synaptonemal complex central element protein 3.
      
 0.535
SYCP1
Synaptonemal complex protein 1.
      
 0.529
ENSODEP00000005305
annotation not available
  
     0.469
PSMA8
Proteasome 20S subunit alpha 8.
    
 
 0.436
CAGE1
Cancer antigen 1.
  
     0.414
SMC3
Structural maintenance of chromosomes 3.
      
 0.412
ENSODEP00000016657
annotation not available
      
 0.410
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.