STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCDHB7Protocadherin beta 7. (640 aa)    
Predicted Functional Partners:
FJX1
Four-jointed box kinase 1.
   
 0.674
JUP
Junction plakoglobin.
    
 0.642
UCK2
Uridine-cytidine kinase 2.
    
 0.640
UCKL1
Uridine-cytidine kinase 1 like 1.
    
 0.640
ENSODEP00000012766
annotation not available
    
 0.640
ENSODEP00000015502
annotation not available
    
 0.640
ENSODEP00000022189
annotation not available
    
 0.640
LOC101584958
Uridine-cytidine kinase 1.
    
 0.640
LHFPL2
LHFPL tetraspan subfamily member 2.
    
  0.625
FAT1
FAT atypical cadherin 1.
    
 
0.621
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.