ENSODEP00000020218 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000020218

annotation not available (976 aa)

Predicted Functional Partners:

MCM2

0.999

MCM4

0.999

MCM5

0.999

TIMELESS

0.999

CDC45

0.999

ENSODEP00000023297

0.999

ENSODEP00000000851

0.998

ENSODEP00000002318

0.998

MCM9

0.998

ENSODEP00000010538

0.998

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC45	ENSODEP00000000851	ENSODEP00000022698	ENSODEP00000000851	Cell division cycle 45.	annotation not available	0.999
CDC45	ENSODEP00000002318	ENSODEP00000022698	ENSODEP00000002318	Cell division cycle 45.	annotation not available	0.999
CDC45	ENSODEP00000010538	ENSODEP00000022698	ENSODEP00000010538	Cell division cycle 45.	annotation not available	0.999
CDC45	ENSODEP00000020218	ENSODEP00000022698	ENSODEP00000020218	Cell division cycle 45.	annotation not available	0.999
CDC45	ENSODEP00000023297	ENSODEP00000022698	ENSODEP00000023297	Cell division cycle 45.	annotation not available	0.999
CDC45	MCM2	ENSODEP00000022698	ENSODEP00000005225	Cell division cycle 45.	Minichromosome maintenance complex component 2.	0.999
CDC45	MCM4	ENSODEP00000022698	ENSODEP00000006175	Cell division cycle 45.	Minichromosome maintenance complex component 4.	0.999
CDC45	MCM5	ENSODEP00000022698	ENSODEP00000007934	Cell division cycle 45.	Minichromosome maintenance complex component 5.	0.999
CDC45	MCM9	ENSODEP00000022698	ENSODEP00000007292	Cell division cycle 45.	Minichromosome maintenance 9 homologous recombination repair factor.	0.999
CDC45	TIMELESS	ENSODEP00000022698	ENSODEP00000008960	Cell division cycle 45.	Timeless circadian regulator.	0.999
ENSODEP00000000851	CDC45	ENSODEP00000000851	ENSODEP00000022698	annotation not available	Cell division cycle 45.	0.999
ENSODEP00000000851	ENSODEP00000020218	ENSODEP00000000851	ENSODEP00000020218	annotation not available	annotation not available	0.998
ENSODEP00000000851	ENSODEP00000023297	ENSODEP00000000851	ENSODEP00000023297	annotation not available	annotation not available	0.999
ENSODEP00000000851	MCM2	ENSODEP00000000851	ENSODEP00000005225	annotation not available	Minichromosome maintenance complex component 2.	0.999
ENSODEP00000000851	MCM4	ENSODEP00000000851	ENSODEP00000006175	annotation not available	Minichromosome maintenance complex component 4.	0.999
ENSODEP00000000851	MCM5	ENSODEP00000000851	ENSODEP00000007934	annotation not available	Minichromosome maintenance complex component 5.	0.999
ENSODEP00000000851	MCM9	ENSODEP00000000851	ENSODEP00000007292	annotation not available	Minichromosome maintenance 9 homologous recombination repair factor.	0.997
ENSODEP00000000851	TIMELESS	ENSODEP00000000851	ENSODEP00000008960	annotation not available	Timeless circadian regulator.	0.997
ENSODEP00000002318	CDC45	ENSODEP00000002318	ENSODEP00000022698	annotation not available	Cell division cycle 45.	0.999
ENSODEP00000002318	ENSODEP00000020218	ENSODEP00000002318	ENSODEP00000020218	annotation not available	annotation not available	0.998