STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FOCADFocadhesin. (1800 aa)    
Predicted Functional Partners:
EXOSC5
Exosome component 5.
    
 
 0.651
EXOSC4
Exosome component 4.
    
 
 0.585
EXOSC6
Exosome component 6.
    
 
 0.585
HACD4
3-hydroxyacyl-CoA dehydratase 4.
      
 0.555
SKIV2L
Ski2 like RNA helicase.
      
 0.530
TTC37
Tetratricopeptide repeat domain 37.
      
 0.480
DDX18
DEAD-box helicase 18.
      
 0.410
DDX31
DEAD-box helicase 31.
      
 0.410
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.