ENSODEP00000020803 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000020803

annotation not available (1163 aa)

Predicted Functional Partners:

RANBP2

0.999

NUP107

0.994

NUP133

0.994

NUP85

0.994

SEC13

0.994

AHCTF1

0.993

NUP160

0.993

ENSODEP00000001606

0.990

ENSODEP00000010954

0.990

ENSODEP00000001489

0.989

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHCTF1	ENSODEP00000001489	ENSODEP00000019599	ENSODEP00000001489	AT-hook containing transcription factor 1.	annotation not available	0.995
AHCTF1	ENSODEP00000001606	ENSODEP00000019599	ENSODEP00000001606	AT-hook containing transcription factor 1.	annotation not available	0.926
AHCTF1	ENSODEP00000010954	ENSODEP00000019599	ENSODEP00000010954	AT-hook containing transcription factor 1.	annotation not available	0.926
AHCTF1	ENSODEP00000020803	ENSODEP00000019599	ENSODEP00000020803	AT-hook containing transcription factor 1.	annotation not available	0.993
AHCTF1	NUP107	ENSODEP00000019599	ENSODEP00000005425	AT-hook containing transcription factor 1.	Nucleoporin 107.	0.998
AHCTF1	NUP133	ENSODEP00000019599	ENSODEP00000010312	AT-hook containing transcription factor 1.	Nucleoporin 133.	0.998
AHCTF1	NUP160	ENSODEP00000019599	ENSODEP00000020861	AT-hook containing transcription factor 1.	Nucleoporin 160.	0.998
AHCTF1	NUP85	ENSODEP00000019599	ENSODEP00000015153	AT-hook containing transcription factor 1.	Nucleoporin 85.	0.997
AHCTF1	RANBP2	ENSODEP00000019599	ENSODEP00000017916	AT-hook containing transcription factor 1.	E3 SUMO-protein ligase RanBP2.	0.987
AHCTF1	SEC13	ENSODEP00000019599	ENSODEP00000024792	AT-hook containing transcription factor 1.	SEC13 homolog, nuclear pore and COPII coat complex component.	0.997
ENSODEP00000001489	AHCTF1	ENSODEP00000001489	ENSODEP00000019599	annotation not available	AT-hook containing transcription factor 1.	0.995
ENSODEP00000001489	ENSODEP00000001606	ENSODEP00000001489	ENSODEP00000001606	annotation not available	annotation not available	0.983
ENSODEP00000001489	ENSODEP00000010954	ENSODEP00000001489	ENSODEP00000010954	annotation not available	annotation not available	0.983
ENSODEP00000001489	ENSODEP00000020803	ENSODEP00000001489	ENSODEP00000020803	annotation not available	annotation not available	0.989
ENSODEP00000001489	NUP107	ENSODEP00000001489	ENSODEP00000005425	annotation not available	Nucleoporin 107.	0.996
ENSODEP00000001489	NUP133	ENSODEP00000001489	ENSODEP00000010312	annotation not available	Nucleoporin 133.	0.996
ENSODEP00000001489	NUP160	ENSODEP00000001489	ENSODEP00000020861	annotation not available	Nucleoporin 160.	0.995
ENSODEP00000001489	NUP85	ENSODEP00000001489	ENSODEP00000015153	annotation not available	Nucleoporin 85.	0.996
ENSODEP00000001489	RANBP2	ENSODEP00000001489	ENSODEP00000017916	annotation not available	E3 SUMO-protein ligase RanBP2.	0.999
ENSODEP00000001489	SEC13	ENSODEP00000001489	ENSODEP00000024792	annotation not available	SEC13 homolog, nuclear pore and COPII coat complex component.	0.996