STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCATLecithin-cholesterol acyltransferase. (439 aa)    
Predicted Functional Partners:
APOA2
Apolipoprotein A2.
   
 0.963
APOB
Apolipoprotein B.
   
 
 0.958
SOAT1
Sterol O-acyltransferase 1.
    
 0.957
SOAT2
Sterol O-acyltransferase 2.
    
 0.957
DGAT1
Diacylglycerol O-acyltransferase 1.
    
 0.957
APOE
Apolipoprotein E.
    
 0.954
ENSODEP00000012142
Apolipoprotein A-I Proapolipoprotein A-I Truncated apolipoprotein A-I.
   
 0.953
DGAT2L6
Diacylglycerol O-acyltransferase 2 like 6.
   
 0.951
AWAT1
acyl-CoA wax alcohol acyltransferase 1.
   
 0.951
AWAT2
acyl-CoA wax alcohol acyltransferase 2.
   
 0.951
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.