STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIPAL3NIPA like domain containing 3. (408 aa)    
Predicted Functional Partners:
UXS1
UDP-glucuronate decarboxylase 1.
   
 
 0.714
FAM131C
Family with sequence similarity 131 member C.
      
 0.545
ZBTB40
Zinc finger and BTB domain containing 40.
      
 0.538
MAN1C1
Mannosidase alpha class 1C member 1.
      
 0.537
ENSODEP00000021479
annotation not available
      
 0.479
ABITRAM
Actin binding transcription modulator.
      
 0.473
CCDC90B
Coiled-coil domain containing 90B.
      
 0.468
TXNDC16
Thioredoxin domain containing 16.
      
 0.463
PDZD3
PDZ domain containing 3.
      
 0.459
SERAC1
Serine active site containing 1.
      
 0.437
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.