DPF3 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DPF3

Double PHD fingers 3. (378 aa)

Predicted Functional Partners:

ARID1B

0.995

SMARCD3

0.995

SS18L1

0.994

SMARCC2

0.994

ARID1A

0.994

SMARCD1

0.994

SMARCC1

0.994

SMARCA4

0.993

ARID2

0.992

ENSODEP00000009046

0.992

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID1A	ARID1B	ENSODEP00000007566	ENSODEP00000011087	AT-rich interaction domain 1A.	AT-rich interaction domain 1B.	0.997
ARID1A	ARID2	ENSODEP00000007566	ENSODEP00000005255	AT-rich interaction domain 1A.	AT-rich interaction domain 2.	0.969
ARID1A	DPF3	ENSODEP00000007566	ENSODEP00000021287	AT-rich interaction domain 1A.	Double PHD fingers 3.	0.994
ARID1A	ENSODEP00000009046	ENSODEP00000007566	ENSODEP00000009046	AT-rich interaction domain 1A.	annotation not available	0.996
ARID1A	SMARCA4	ENSODEP00000007566	ENSODEP00000023360	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.	0.998
ARID1A	SMARCC1	ENSODEP00000007566	ENSODEP00000016973	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1.	0.997
ARID1A	SMARCC2	ENSODEP00000007566	ENSODEP00000007147	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2.	0.998
ARID1A	SMARCD1	ENSODEP00000007566	ENSODEP00000013844	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.	0.998
ARID1A	SMARCD3	ENSODEP00000007566	ENSODEP00000013353	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.	0.995
ARID1A	SS18L1	ENSODEP00000007566	ENSODEP00000005343	AT-rich interaction domain 1A.	SS18L1 subunit of BAF chromatin remodeling complex.	0.983
ARID1B	ARID1A	ENSODEP00000011087	ENSODEP00000007566	AT-rich interaction domain 1B.	AT-rich interaction domain 1A.	0.997
ARID1B	ARID2	ENSODEP00000011087	ENSODEP00000005255	AT-rich interaction domain 1B.	AT-rich interaction domain 2.	0.970
ARID1B	DPF3	ENSODEP00000011087	ENSODEP00000021287	AT-rich interaction domain 1B.	Double PHD fingers 3.	0.995
ARID1B	ENSODEP00000009046	ENSODEP00000011087	ENSODEP00000009046	AT-rich interaction domain 1B.	annotation not available	0.994
ARID1B	SMARCA4	ENSODEP00000011087	ENSODEP00000023360	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.	0.997
ARID1B	SMARCC1	ENSODEP00000011087	ENSODEP00000016973	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1.	0.996
ARID1B	SMARCC2	ENSODEP00000011087	ENSODEP00000007147	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2.	0.996
ARID1B	SMARCD1	ENSODEP00000011087	ENSODEP00000013844	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.	0.996
ARID1B	SMARCD3	ENSODEP00000011087	ENSODEP00000013353	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.	0.991
ARID1B	SS18L1	ENSODEP00000011087	ENSODEP00000005343	AT-rich interaction domain 1B.	SS18L1 subunit of BAF chromatin remodeling complex.	0.984