ENSODEP00000021397 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000021397

annotation not available (213 aa)

Predicted Functional Partners:

RAB35

0.985

IFT27

0.949

DENND1A

0.684

CHM

0.663

DENND5B

0.662

DENND4B

0.652

ENSODEP00000001204

0.645

ENSODEP00000001699

0.645

ENSODEP00000024773

0.645

ENSODEP00000025567

0.645

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHM	DENND1A	ENSODEP00000001538	ENSODEP00000005724	CHM Rab escort protein.	DENN domain containing 1A.	0.685
CHM	DENND5B	ENSODEP00000001538	ENSODEP00000006574	CHM Rab escort protein.	DENN domain containing 5B.	0.652
CHM	ENSODEP00000021397	ENSODEP00000001538	ENSODEP00000021397	CHM Rab escort protein.	annotation not available	0.663
CHM	IFT27	ENSODEP00000001538	ENSODEP00000016305	CHM Rab escort protein.	Intraflagellar transport 27.	0.749
CHM	RAB35	ENSODEP00000001538	ENSODEP00000009646	CHM Rab escort protein.	RAB35, member RAS oncogene family.	0.819
DENND1A	CHM	ENSODEP00000005724	ENSODEP00000001538	DENN domain containing 1A.	CHM Rab escort protein.	0.685
DENND1A	DENND4B	ENSODEP00000005724	ENSODEP00000018553	DENN domain containing 1A.	DENN domain containing 4B.	0.608
DENND1A	DENND5B	ENSODEP00000005724	ENSODEP00000006574	DENN domain containing 1A.	DENN domain containing 5B.	0.568
DENND1A	ENSODEP00000001204	ENSODEP00000005724	ENSODEP00000001204	DENN domain containing 1A.	annotation not available	0.679
DENND1A	ENSODEP00000001699	ENSODEP00000005724	ENSODEP00000001699	DENN domain containing 1A.	annotation not available	0.679
DENND1A	ENSODEP00000021397	ENSODEP00000005724	ENSODEP00000021397	DENN domain containing 1A.	annotation not available	0.684
DENND1A	ENSODEP00000024773	ENSODEP00000005724	ENSODEP00000024773	DENN domain containing 1A.	annotation not available	0.679
DENND1A	ENSODEP00000025567	ENSODEP00000005724	ENSODEP00000025567	DENN domain containing 1A.	annotation not available	0.679
DENND1A	IFT27	ENSODEP00000005724	ENSODEP00000016305	DENN domain containing 1A.	Intraflagellar transport 27.	0.949
DENND1A	RAB35	ENSODEP00000005724	ENSODEP00000009646	DENN domain containing 1A.	RAB35, member RAS oncogene family.	0.988
DENND4B	DENND1A	ENSODEP00000018553	ENSODEP00000005724	DENN domain containing 4B.	DENN domain containing 1A.	0.608
DENND4B	DENND5B	ENSODEP00000018553	ENSODEP00000006574	DENN domain containing 4B.	DENN domain containing 5B.	0.937
DENND4B	ENSODEP00000021397	ENSODEP00000018553	ENSODEP00000021397	DENN domain containing 4B.	annotation not available	0.652
DENND5B	CHM	ENSODEP00000006574	ENSODEP00000001538	DENN domain containing 5B.	CHM Rab escort protein.	0.652
DENND5B	DENND1A	ENSODEP00000006574	ENSODEP00000005724	DENN domain containing 5B.	DENN domain containing 1A.	0.568