NOC3L protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NOC3L

NOC3 like DNA replication regulator. (801 aa)

Predicted Functional Partners:

ENSODEP00000001214

0.999

EBNA1BP2

0.999

ENSODEP00000003115

0.999

WDR74

0.999

PES1

0.999

ENSODEP00000004680

0.999

RSL24D1

0.999

ENSODEP00000008366

0.999

DDX18

0.999

FTSJ3

0.999

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX18	EBNA1BP2	ENSODEP00000009802	ENSODEP00000002397	DEAD-box helicase 18.	EBNA1 binding protein 2.	0.999
DDX18	ENSODEP00000001214	ENSODEP00000009802	ENSODEP00000001214	DEAD-box helicase 18.	annotation not available	0.999
DDX18	ENSODEP00000003115	ENSODEP00000009802	ENSODEP00000003115	DEAD-box helicase 18.	annotation not available	0.999
DDX18	ENSODEP00000004680	ENSODEP00000009802	ENSODEP00000004680	DEAD-box helicase 18.	annotation not available	0.999
DDX18	ENSODEP00000008366	ENSODEP00000009802	ENSODEP00000008366	DEAD-box helicase 18.	annotation not available	0.999
DDX18	FTSJ3	ENSODEP00000009802	ENSODEP00000010965	DEAD-box helicase 18.	FtsJ RNA 2'-O-methyltransferase 3.	0.999
DDX18	NOC3L	ENSODEP00000009802	ENSODEP00000021497	DEAD-box helicase 18.	NOC3 like DNA replication regulator.	0.999
DDX18	PES1	ENSODEP00000009802	ENSODEP00000004180	DEAD-box helicase 18.	Pescadillo ribosomal biogenesis factor 1.	0.999
DDX18	RSL24D1	ENSODEP00000009802	ENSODEP00000007273	DEAD-box helicase 18.	Ribosomal L24 domain containing 1.	0.999
DDX18	WDR74	ENSODEP00000009802	ENSODEP00000004104	DEAD-box helicase 18.	WD repeat domain 74.	0.999
EBNA1BP2	DDX18	ENSODEP00000002397	ENSODEP00000009802	EBNA1 binding protein 2.	DEAD-box helicase 18.	0.999
EBNA1BP2	ENSODEP00000001214	ENSODEP00000002397	ENSODEP00000001214	EBNA1 binding protein 2.	annotation not available	0.999
EBNA1BP2	ENSODEP00000003115	ENSODEP00000002397	ENSODEP00000003115	EBNA1 binding protein 2.	annotation not available	0.999
EBNA1BP2	ENSODEP00000004680	ENSODEP00000002397	ENSODEP00000004680	EBNA1 binding protein 2.	annotation not available	0.999
EBNA1BP2	ENSODEP00000008366	ENSODEP00000002397	ENSODEP00000008366	EBNA1 binding protein 2.	annotation not available	0.999
EBNA1BP2	FTSJ3	ENSODEP00000002397	ENSODEP00000010965	EBNA1 binding protein 2.	FtsJ RNA 2'-O-methyltransferase 3.	0.999
EBNA1BP2	NOC3L	ENSODEP00000002397	ENSODEP00000021497	EBNA1 binding protein 2.	NOC3 like DNA replication regulator.	0.999
EBNA1BP2	PES1	ENSODEP00000002397	ENSODEP00000004180	EBNA1 binding protein 2.	Pescadillo ribosomal biogenesis factor 1.	0.999
EBNA1BP2	RSL24D1	ENSODEP00000002397	ENSODEP00000007273	EBNA1 binding protein 2.	Ribosomal L24 domain containing 1.	0.999
EBNA1BP2	WDR74	ENSODEP00000002397	ENSODEP00000004104	EBNA1 binding protein 2.	WD repeat domain 74.	0.999