ENSODEP00000022899 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000022899

annotation not available (220 aa)

Predicted Functional Partners:

Rab3ip

0.947

RAB3IL1

0.945

EXOC4

0.919

EXOC6

0.913

EXOC6B

0.913

ENSODEP00000003271

0.908

ENSODEP00000005452

0.908

GDI1

0.908

ENSODEP00000010922

0.908

ENSODEP00000012184

0.908

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000003271	ENSODEP00000022899	ENSODEP00000003271	ENSODEP00000022899	annotation not available	annotation not available	0.908
ENSODEP00000003271	RAB3IL1	ENSODEP00000003271	ENSODEP00000006422	annotation not available	RAB3A interacting protein like 1.	0.760
ENSODEP00000003271	Rab3ip	ENSODEP00000003271	ENSODEP00000005530	annotation not available	annotation not available	0.760
ENSODEP00000005452	ENSODEP00000022899	ENSODEP00000005452	ENSODEP00000022899	annotation not available	annotation not available	0.908
ENSODEP00000005452	RAB3IL1	ENSODEP00000005452	ENSODEP00000006422	annotation not available	RAB3A interacting protein like 1.	0.760
ENSODEP00000005452	Rab3ip	ENSODEP00000005452	ENSODEP00000005530	annotation not available	annotation not available	0.760
ENSODEP00000010922	ENSODEP00000022899	ENSODEP00000010922	ENSODEP00000022899	annotation not available	annotation not available	0.908
ENSODEP00000010922	RAB3IL1	ENSODEP00000010922	ENSODEP00000006422	annotation not available	RAB3A interacting protein like 1.	0.760
ENSODEP00000010922	Rab3ip	ENSODEP00000010922	ENSODEP00000005530	annotation not available	annotation not available	0.760
ENSODEP00000012184	ENSODEP00000022899	ENSODEP00000012184	ENSODEP00000022899	annotation not available	annotation not available	0.908
ENSODEP00000012184	RAB3IL1	ENSODEP00000012184	ENSODEP00000006422	annotation not available	RAB3A interacting protein like 1.	0.760
ENSODEP00000012184	Rab3ip	ENSODEP00000012184	ENSODEP00000005530	annotation not available	annotation not available	0.760
ENSODEP00000022899	ENSODEP00000003271	ENSODEP00000022899	ENSODEP00000003271	annotation not available	annotation not available	0.908
ENSODEP00000022899	ENSODEP00000005452	ENSODEP00000022899	ENSODEP00000005452	annotation not available	annotation not available	0.908
ENSODEP00000022899	ENSODEP00000010922	ENSODEP00000022899	ENSODEP00000010922	annotation not available	annotation not available	0.908
ENSODEP00000022899	ENSODEP00000012184	ENSODEP00000022899	ENSODEP00000012184	annotation not available	annotation not available	0.908
ENSODEP00000022899	EXOC4	ENSODEP00000022899	ENSODEP00000015036	annotation not available	Exocyst complex component 4.	0.919
ENSODEP00000022899	EXOC6	ENSODEP00000022899	ENSODEP00000006726	annotation not available	Exocyst complex component 6.	0.913
ENSODEP00000022899	EXOC6B	ENSODEP00000022899	ENSODEP00000013836	annotation not available	Exocyst complex component 6B.	0.913
ENSODEP00000022899	GDI1	ENSODEP00000022899	ENSODEP00000008760	annotation not available	GDP dissociation inhibitor 1.	0.908