STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB3CRAB3C, member RAS oncogene family. (227 aa)    
Predicted Functional Partners:
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 0.999
SYT2
Synaptotagmin 2.
   
 0.913
SYTL4
Synaptotagmin like 4.
   
 0.902
ENSODEP00000006256
annotation not available
    
 0.881
SYT11
Synaptotagmin 11.
   
 0.873
SYT4
Synaptotagmin 4.
   
 0.873
RPH3A
Rabphilin 3A.
   
 
 0.870
DOC2B
Double C2 domain beta.
   
 
 0.865
SNAP25
Synaptosome associated protein 25.
   
 0.863
CHM
CHM Rab escort protein.
    
 0.846
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.