ENSODEP00000023029 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000023029

annotation not available (371 aa)

Predicted Functional Partners:

IPO9

0.848

SHISA4

0.847

ENSODEP00000001846

0.816

ENSODEP00000006836

0.816

BRSK1

0.810

BRSK2

0.810

MACROH2A1

0.808

MACROH2A2

0.808

ENSODEP00000004016

0.801

ENSODEP00000004183

0.801

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRSK1	ENSODEP00000023029	ENSODEP00000019641	ENSODEP00000023029	BR serine/threonine kinase 1.	annotation not available	0.810
BRSK2	ENSODEP00000023029	ENSODEP00000020590	ENSODEP00000023029	BR serine/threonine kinase 2.	annotation not available	0.810
ENSODEP00000001846	ENSODEP00000023029	ENSODEP00000001846	ENSODEP00000023029	annotation not available	annotation not available	0.816
ENSODEP00000004016	ENSODEP00000023029	ENSODEP00000004016	ENSODEP00000023029	annotation not available	annotation not available	0.801
ENSODEP00000004016	IPO9	ENSODEP00000004016	ENSODEP00000015421	annotation not available	Importin 9.	0.794
ENSODEP00000004016	MACROH2A1	ENSODEP00000004016	ENSODEP00000010780	annotation not available	Core histone macro-H2A.1.	0.929
ENSODEP00000004016	MACROH2A2	ENSODEP00000004016	ENSODEP00000018509	annotation not available	macroH2A.2 histone.	0.929
ENSODEP00000004016	SHISA4	ENSODEP00000004016	ENSODEP00000015237	annotation not available	Shisa family member 4.	0.794
ENSODEP00000004183	ENSODEP00000023029	ENSODEP00000004183	ENSODEP00000023029	annotation not available	annotation not available	0.801
ENSODEP00000004183	IPO9	ENSODEP00000004183	ENSODEP00000015421	annotation not available	Importin 9.	0.794
ENSODEP00000004183	MACROH2A1	ENSODEP00000004183	ENSODEP00000010780	annotation not available	Core histone macro-H2A.1.	0.929
ENSODEP00000004183	MACROH2A2	ENSODEP00000004183	ENSODEP00000018509	annotation not available	macroH2A.2 histone.	0.929
ENSODEP00000004183	SHISA4	ENSODEP00000004183	ENSODEP00000015237	annotation not available	Shisa family member 4.	0.794
ENSODEP00000006836	ENSODEP00000023029	ENSODEP00000006836	ENSODEP00000023029	annotation not available	annotation not available	0.816
ENSODEP00000023029	BRSK1	ENSODEP00000023029	ENSODEP00000019641	annotation not available	BR serine/threonine kinase 1.	0.810
ENSODEP00000023029	BRSK2	ENSODEP00000023029	ENSODEP00000020590	annotation not available	BR serine/threonine kinase 2.	0.810
ENSODEP00000023029	ENSODEP00000001846	ENSODEP00000023029	ENSODEP00000001846	annotation not available	annotation not available	0.816
ENSODEP00000023029	ENSODEP00000004016	ENSODEP00000023029	ENSODEP00000004016	annotation not available	annotation not available	0.801
ENSODEP00000023029	ENSODEP00000004183	ENSODEP00000023029	ENSODEP00000004183	annotation not available	annotation not available	0.801
ENSODEP00000023029	ENSODEP00000006836	ENSODEP00000023029	ENSODEP00000006836	annotation not available	annotation not available	0.816