STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NUP93Nucleoporin 93. (819 aa)    
Predicted Functional Partners:
NUP98
Nucleoporin 98.
   
 0.999
NUP85
Nucleoporin 85.
   
 0.999
RANBP2
E3 SUMO-protein ligase RanBP2.
   
 0.999
NUP205
Nucleoporin 205.
   
 0.999
NUP188
Nucleoporin 188.
   
 0.999
NUP155
Nucleoporin 155.
   
 0.999
NUP107
Nucleoporin 107.
   
 0.998
NDC1
NDC1 transmembrane nucleoporin.
   
 0.997
NUP133
Nucleoporin 133.
   
 0.997
NUP153
Nucleoporin 153.
    
 0.996
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.