STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snrpcannotation not available (159 aa)    
Predicted Functional Partners:
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.996
SNRPD1
Small nuclear ribonucleoprotein Sm D1.
   
 0.993
SNRPG
Small nuclear ribonucleoprotein G.
   
 0.993
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.990
SNRNP70
Small nuclear ribonucleoprotein U1 subunit 70.
   
 0.989
SF3B5
Splicing factor 3b subunit 5.
   
 0.989
ENSODEP00000018621
annotation not available
   
 0.987
ENSODEP00000021839
annotation not available
   
 0.986
SF3B2
Splicing factor 3b subunit 2.
   
 0.985
SF3B3
Splicing factor 3b subunit 3.
   
 0.984
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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