STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RHBDD3Rhomboid domain containing 3. (378 aa)    
Predicted Functional Partners:
ENSODEP00000007615
annotation not available
     
 0.908
MRE11
MRE11 homolog, double strand break repair nuclease.
   
 
 0.897
SPATA5
Spermatogenesis associated 5.
    
 
 0.860
VCP
Valosin containing protein.
    
 
 0.860
R3HDM4
R3H domain containing 4.
     
 0.851
ENSODEP00000021517
annotation not available
     
 0.851
RIPK4
Receptor interacting serine/threonine kinase 4.
    
 0.821
RNASEL
Ribonuclease L.
    
 0.813
DERL1
Derlin 1.
   
 
 0.801
DERL3
Derlin 3.
   
 
 0.801
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.