STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CABP4Calcium binding protein 4. (274 aa)    
Predicted Functional Partners:
CASK
Calcium/calmodulin dependent serine protein kinase.
    
 0.946
MYO3A
Myosin IIIA.
   
 0.923
MYO3B
Myosin IIIB.
   
 0.923
MYO9B
Myosin IXB.
    
 0.876
MYO9A
Myosin IXA.
    
 0.876
RANBP2
E3 SUMO-protein ligase RanBP2.
   
 0.834
CAMK2A
Calcium/calmodulin dependent protein kinase II alpha.
    
 0.827
ENSODEP00000014882
annotation not available
   
 0.827
TNNI3
Troponin I3, cardiac type.
   
 0.827
TNNI1
Troponin I1, slow skeletal type.
   
 0.827
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.