STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VAX1Ventral anterior homeobox 1. (334 aa)    
Predicted Functional Partners:
LDB1
LIM domain binding 1.
    
 0.789
LDB2
LIM domain binding 2.
    
 0.789
SRF
Serum response factor.
    
 0.733
TMEM262
Transmembrane protein 262.
    
  0.717
ZNF462
Zinc finger protein 462.
    
 
 0.607
ENSODEP00000000138
annotation not available
    
  0.605
ENSODEP00000000026
annotation not available
    
  0.600
TCF3
Transcription factor 3.
    
  0.600
ENSODEP00000023520
annotation not available
    
  0.600
ENSODEP00000023602
annotation not available
    
  0.600
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.