GPANK1 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

GPANK1

G-patch domain and ankyrin repeats 1. (353 aa)

Predicted Functional Partners:

ABT1

0.734

ARRDC1

0.555

ALDH18A1

0.555

APOM

0.555

FAM110A

0.555

PRRC2A

0.550

EXO5

0.533

ALKBH4

0.504

SPARCL1

0.478

ENSODEP00000006327

0.475

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABT1	GPANK1	ENSODEP00000019880	ENSODEP00000024519	Activator of basal transcription 1.	G-patch domain and ankyrin repeats 1.	0.734
ALDH18A1	ENSODEP00000006327	ENSODEP00000021461	ENSODEP00000006327	Aldehyde dehydrogenase 18 family member A1.	annotation not available	0.761
ALDH18A1	GPANK1	ENSODEP00000021461	ENSODEP00000024519	Aldehyde dehydrogenase 18 family member A1.	G-patch domain and ankyrin repeats 1.	0.555
ALKBH4	GPANK1	ENSODEP00000022203	ENSODEP00000024519	alkB homolog 4, lysine demethylase.	G-patch domain and ankyrin repeats 1.	0.504
APOM	GPANK1	ENSODEP00000024429	ENSODEP00000024519	Apolipoprotein M.	G-patch domain and ankyrin repeats 1.	0.555
ARRDC1	ENSODEP00000006327	ENSODEP00000019540	ENSODEP00000006327	Arrestin domain containing 1.	annotation not available	0.404
ARRDC1	EXO5	ENSODEP00000019540	ENSODEP00000025520	Arrestin domain containing 1.	Exonuclease 5.	0.477
ARRDC1	FAM110A	ENSODEP00000019540	ENSODEP00000025325	Arrestin domain containing 1.	Family with sequence similarity 110 member A.	0.555
ARRDC1	GPANK1	ENSODEP00000019540	ENSODEP00000024519	Arrestin domain containing 1.	G-patch domain and ankyrin repeats 1.	0.555
ENSODEP00000006327	ALDH18A1	ENSODEP00000006327	ENSODEP00000021461	annotation not available	Aldehyde dehydrogenase 18 family member A1.	0.761
ENSODEP00000006327	ARRDC1	ENSODEP00000006327	ENSODEP00000019540	annotation not available	Arrestin domain containing 1.	0.404
ENSODEP00000006327	FAM110A	ENSODEP00000006327	ENSODEP00000025325	annotation not available	Family with sequence similarity 110 member A.	0.475
ENSODEP00000006327	GPANK1	ENSODEP00000006327	ENSODEP00000024519	annotation not available	G-patch domain and ankyrin repeats 1.	0.475
EXO5	ARRDC1	ENSODEP00000025520	ENSODEP00000019540	Exonuclease 5.	Arrestin domain containing 1.	0.477
EXO5	FAM110A	ENSODEP00000025520	ENSODEP00000025325	Exonuclease 5.	Family with sequence similarity 110 member A.	0.533
EXO5	GPANK1	ENSODEP00000025520	ENSODEP00000024519	Exonuclease 5.	G-patch domain and ankyrin repeats 1.	0.533
FAM110A	ARRDC1	ENSODEP00000025325	ENSODEP00000019540	Family with sequence similarity 110 member A.	Arrestin domain containing 1.	0.555
FAM110A	ENSODEP00000006327	ENSODEP00000025325	ENSODEP00000006327	Family with sequence similarity 110 member A.	annotation not available	0.475
FAM110A	EXO5	ENSODEP00000025325	ENSODEP00000025520	Family with sequence similarity 110 member A.	Exonuclease 5.	0.533
FAM110A	GPANK1	ENSODEP00000025325	ENSODEP00000024519	Family with sequence similarity 110 member A.	G-patch domain and ankyrin repeats 1.	0.555