STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL6A6Collagen type VI alpha 6 chain. (2243 aa)    
Predicted Functional Partners:
ENSODEP00000005624
annotation not available
    
 0.920
TEP1
Telomerase associated protein 1.
    
 0.918
ITGAV
Integrin subunit alpha V.
   
 0.916
SDC1
Syndecan 1.
     
 0.905
ITGA9
Integrin subunit alpha 9.
    
 0.903
ITGA6
Integrin subunit alpha 6.
    
 0.892
ITGB6
Integrin subunit beta 6.
    
 0.884
ITGA2B
Integrin subunit alpha 2b.
    
 0.882
ITGB8
Integrin subunit beta 8.
    
 0.880
ITGB4
Integrin subunit beta 4.
    
 0.878
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.