STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCBP4poly(rC) binding protein 4. (404 aa)    
Predicted Functional Partners:
PRPF39
pre-mRNA processing factor 39.
    
 0.863
PRPF8
pre-mRNA processing factor 8.
    
   0.816
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.800
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
  0.800
ZNF830
Zinc finger protein 830.
    
   0.787
ENSODEP00000015551
annotation not available
   
 0.775
SNRNP70
Small nuclear ribonucleoprotein U1 subunit 70.
   
 0.773
SNRPG
Small nuclear ribonucleoprotein G.
   
 
  0.769
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.760
SNRPD1
Small nuclear ribonucleoprotein Sm D1.
   
 
 0.759
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.