KRTAP11-1 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRTAP11-1

Keratin associated protein 11-1. (157 aa)

Predicted Functional Partners:

KRTAP8-1

0.970

KRTAP7-1

0.963

KRTAP3-1

0.955

KRT85

0.899

KRT71

0.895

ENSODEP00000003196

0.881

KRT35

0.871

ENSODEP00000024428

0.833

ENSODEP00000026955

0.789

ENSODEP00000026993

0.775

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000003196	KRT35	ENSODEP00000003196	ENSODEP00000024442	annotation not available	Keratin 35.	0.582
ENSODEP00000003196	KRTAP11-1	ENSODEP00000003196	ENSODEP00000025594	annotation not available	Keratin associated protein 11-1.	0.881
ENSODEP00000003196	KRTAP3-1	ENSODEP00000003196	ENSODEP00000027037	annotation not available	Keratin associated protein 3-1.	0.465
ENSODEP00000003196	KRTAP7-1	ENSODEP00000003196	ENSODEP00000025297	annotation not available	Keratin associated protein 7-1 (gene/pseudogene).	0.794
ENSODEP00000003196	KRTAP8-1	ENSODEP00000003196	ENSODEP00000025287	annotation not available	Keratin associated protein 8-1.	0.867
ENSODEP00000024428	ENSODEP00000026993	ENSODEP00000024428	ENSODEP00000026993	annotation not available	annotation not available	0.415
ENSODEP00000024428	KRTAP11-1	ENSODEP00000024428	ENSODEP00000025594	annotation not available	Keratin associated protein 11-1.	0.833
ENSODEP00000024428	KRTAP3-1	ENSODEP00000024428	ENSODEP00000027037	annotation not available	Keratin associated protein 3-1.	0.875
ENSODEP00000024428	KRTAP7-1	ENSODEP00000024428	ENSODEP00000025297	annotation not available	Keratin associated protein 7-1 (gene/pseudogene).	0.513
ENSODEP00000026955	ENSODEP00000026993	ENSODEP00000026955	ENSODEP00000026993	annotation not available	annotation not available	0.407
ENSODEP00000026955	KRTAP11-1	ENSODEP00000026955	ENSODEP00000025594	annotation not available	Keratin associated protein 11-1.	0.789
ENSODEP00000026955	KRTAP3-1	ENSODEP00000026955	ENSODEP00000027037	annotation not available	Keratin associated protein 3-1.	0.588
ENSODEP00000026955	KRTAP8-1	ENSODEP00000026955	ENSODEP00000025287	annotation not available	Keratin associated protein 8-1.	0.602
ENSODEP00000026993	ENSODEP00000024428	ENSODEP00000026993	ENSODEP00000024428	annotation not available	annotation not available	0.415
ENSODEP00000026993	ENSODEP00000026955	ENSODEP00000026993	ENSODEP00000026955	annotation not available	annotation not available	0.407
ENSODEP00000026993	KRT71	ENSODEP00000026993	ENSODEP00000020558	annotation not available	Keratin 71.	0.519
ENSODEP00000026993	KRTAP11-1	ENSODEP00000026993	ENSODEP00000025594	annotation not available	Keratin associated protein 11-1.	0.775
ENSODEP00000026993	KRTAP3-1	ENSODEP00000026993	ENSODEP00000027037	annotation not available	Keratin associated protein 3-1.	0.937
ENSODEP00000026993	KRTAP7-1	ENSODEP00000026993	ENSODEP00000025297	annotation not available	Keratin associated protein 7-1 (gene/pseudogene).	0.592
ENSODEP00000026993	KRTAP8-1	ENSODEP00000026993	ENSODEP00000025287	annotation not available	Keratin associated protein 8-1.	0.724