STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB9ARAB9A, member RAS oncogene family. (201 aa)    
Predicted Functional Partners:
ENSODEP00000015232
annotation not available
    
 0.986
VPS16
VPS16 core subunit of CORVET and HOPS complexes.
    
 
 0.981
VPS11
VPS11 core subunit of CORVET and HOPS complexes.
    
 
 0.981
VPS18
VPS18 core subunit of CORVET and HOPS complexes.
   
 
 0.981
ENSODEP00000003271
annotation not available
    
 0.971
ENSODEP00000005452
annotation not available
    
 0.971
GDI1
GDP dissociation inhibitor 1.
    
 0.971
ENSODEP00000010922
annotation not available
    
 0.971
ENSODEP00000012184
annotation not available
    
 0.971
ENSODEP00000010257
annotation not available
    
 
 0.970
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.