ENSODEP00000025789 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000025789

annotation not available (121 aa)

Predicted Functional Partners:

PFDN2

0.996

ENSODEP00000008392

0.994

ENSODEP00000009182

0.994

ENSODEP00000023942

0.994

ENSODEP00000024118

0.994

ENSODEP00000000609

0.992

ENSODEP00000002994

0.992

ENSODEP00000005165

0.988

ENSODEP00000012261

0.988

ENSODEP00000015194

0.988

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000000609	ENSODEP00000005165	ENSODEP00000000609	ENSODEP00000005165	annotation not available	annotation not available	0.988
ENSODEP00000000609	ENSODEP00000008392	ENSODEP00000000609	ENSODEP00000008392	annotation not available	annotation not available	0.996
ENSODEP00000000609	ENSODEP00000009182	ENSODEP00000000609	ENSODEP00000009182	annotation not available	annotation not available	0.996
ENSODEP00000000609	ENSODEP00000012261	ENSODEP00000000609	ENSODEP00000012261	annotation not available	annotation not available	0.988
ENSODEP00000000609	ENSODEP00000015194	ENSODEP00000000609	ENSODEP00000015194	annotation not available	annotation not available	0.988
ENSODEP00000000609	ENSODEP00000023942	ENSODEP00000000609	ENSODEP00000023942	annotation not available	annotation not available	0.996
ENSODEP00000000609	ENSODEP00000024118	ENSODEP00000000609	ENSODEP00000024118	annotation not available	annotation not available	0.996
ENSODEP00000000609	ENSODEP00000025789	ENSODEP00000000609	ENSODEP00000025789	annotation not available	annotation not available	0.992
ENSODEP00000000609	PFDN2	ENSODEP00000000609	ENSODEP00000010578	annotation not available	Prefoldin subunit 2.	0.999
ENSODEP00000002994	ENSODEP00000005165	ENSODEP00000002994	ENSODEP00000005165	annotation not available	annotation not available	0.988
ENSODEP00000002994	ENSODEP00000008392	ENSODEP00000002994	ENSODEP00000008392	annotation not available	annotation not available	0.996
ENSODEP00000002994	ENSODEP00000009182	ENSODEP00000002994	ENSODEP00000009182	annotation not available	annotation not available	0.996
ENSODEP00000002994	ENSODEP00000012261	ENSODEP00000002994	ENSODEP00000012261	annotation not available	annotation not available	0.988
ENSODEP00000002994	ENSODEP00000015194	ENSODEP00000002994	ENSODEP00000015194	annotation not available	annotation not available	0.988
ENSODEP00000002994	ENSODEP00000023942	ENSODEP00000002994	ENSODEP00000023942	annotation not available	annotation not available	0.996
ENSODEP00000002994	ENSODEP00000024118	ENSODEP00000002994	ENSODEP00000024118	annotation not available	annotation not available	0.996
ENSODEP00000002994	ENSODEP00000025789	ENSODEP00000002994	ENSODEP00000025789	annotation not available	annotation not available	0.992
ENSODEP00000002994	PFDN2	ENSODEP00000002994	ENSODEP00000010578	annotation not available	Prefoldin subunit 2.	0.999
ENSODEP00000005165	ENSODEP00000000609	ENSODEP00000005165	ENSODEP00000000609	annotation not available	annotation not available	0.988
ENSODEP00000005165	ENSODEP00000002994	ENSODEP00000005165	ENSODEP00000002994	annotation not available	annotation not available	0.988