STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000025793annotation not available (808 aa)    
Predicted Functional Partners:
NOL6
Nucleolar protein 6.
    
 0.966
UTP6
UTP6 small subunit processome component.
    
 0.963
BYSL
Bystin like.
    
 0.961
IMP3
IMP U3 small nucleolar ribonucleoprotein 3.
    
  0.961
RRP36
Ribosomal RNA processing 36.
   
  0.960
SUGP1
SURP and G-patch domain containing 1.
   
 0.957
DDX18
DEAD-box helicase 18.
    
 0.939
NOP14
NOP14 nucleolar protein.
    
  0.938
ENSODEP00000001067
annotation not available
   
 0.936
RBM39
RNA binding motif protein 39.
   
 0.936
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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