STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATOH1Atonal bHLH transcription factor 1. (350 aa)    
Predicted Functional Partners:
ENSODEP00000000026
annotation not available
    
 
 0.883
TCF3
Transcription factor 3.
    
 
 0.883
ENSODEP00000023520
annotation not available
    
 
 0.883
ENSODEP00000023602
annotation not available
    
 
 0.883
TCF4
Transcription factor 4.
    
 
 0.883
ASCL2
Achaete-scute family bHLH transcription factor 2.
   
 
0.616
ASCL1
Achaete-scute family bHLH transcription factor 1.
   
 
 0.616
HES1
Hes family bHLH transcription factor 1.
    
 
 0.608
SHH
Sonic hedgehog signaling molecule.
    
 
 0.556
ENSODEP00000008576
annotation not available
    
 
 0.537
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.