STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
REP15RAB15 effector protein. (235 aa)    
Predicted Functional Partners:
PPFIA2
PTPRF interacting protein alpha 2.
   
 0.898
PPFIA4
PTPRF interacting protein alpha 4.
   
 0.898
ENSODEP00000022376
annotation not available
   
 0.898
ENSODEP00000022451
annotation not available
   
 0.898
PPFIA3
PTPRF interacting protein alpha 3.
   
 0.898
PPFIA1
PTPRF interacting protein alpha 1.
   
 0.898
PTPRU
Protein tyrosine phosphatase receptor type U.
     
 0.592
PTPRF
Protein tyrosine phosphatase receptor type F.
     
 0.592
PTPRK
Protein tyrosine phosphatase receptor type K.
     
 0.592
PTPRA
Protein tyrosine phosphatase receptor type A.
     
 0.592
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.