STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRH2peptidyl-tRNA hydrolase 2. (179 aa)    
Predicted Functional Partners:
TMEM109
Transmembrane protein 109.
    
  0.791
GATB
glutamyl-tRNA amidotransferase subunit B.
    
  0.791
NUP155
Nucleoporin 155.
    
  0.776
USP30
Ubiquitin specific peptidase 30.
    
  0.774
RHOT1
Ras homolog family member T1.
    
  0.696
ENSODEP00000011085
annotation not available
    
  0.693
ENSODEP00000018305
annotation not available
    
  0.693
ENSODEP00000006684
annotation not available
   
 
 0.690
TOMM20
Translocase of outer mitochondrial membrane 20.
   
 
 0.687
CYB5R4
Cytochrome b5 reductase 4.
   
 
 0.687
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.