ENSODEP00000026675 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000026675

annotation not available (199 aa)

Predicted Functional Partners:

SRXN1

0.961

PRDX5

0.921

NME8

0.918

CAT

0.874

ENSODEP00000015169

0.861

ENSODEP00000008396

0.850

ENSODEP00000009408

0.836

TXNRD1

0.831

ENSODEP00000007110

0.826

ENSODEP00000000096

0.825

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAT	ENSODEP00000000096	ENSODEP00000022847	ENSODEP00000000096	Catalase.	annotation not available	0.442
CAT	ENSODEP00000007110	ENSODEP00000022847	ENSODEP00000007110	Catalase.	annotation not available	0.442
CAT	ENSODEP00000009408	ENSODEP00000022847	ENSODEP00000009408	Catalase.	annotation not available	0.946
CAT	ENSODEP00000015169	ENSODEP00000022847	ENSODEP00000015169	Catalase.	annotation not available	0.538
CAT	ENSODEP00000026675	ENSODEP00000022847	ENSODEP00000026675	Catalase.	annotation not available	0.874
CAT	NME8	ENSODEP00000022847	ENSODEP00000010810	Catalase.	NME/NM23 family member 8.	0.727
CAT	PRDX5	ENSODEP00000022847	ENSODEP00000020250	Catalase.	Peroxiredoxin 5.	0.654
CAT	SRXN1	ENSODEP00000022847	ENSODEP00000015156	Catalase.	Sulfiredoxin 1.	0.553
CAT	TXNRD1	ENSODEP00000022847	ENSODEP00000016387	Catalase.	Thioredoxin reductase 1.	0.672
ENSODEP00000000096	CAT	ENSODEP00000000096	ENSODEP00000022847	annotation not available	Catalase.	0.442
ENSODEP00000000096	ENSODEP00000007110	ENSODEP00000000096	ENSODEP00000007110	annotation not available	annotation not available	0.685
ENSODEP00000000096	ENSODEP00000008396	ENSODEP00000000096	ENSODEP00000008396	annotation not available	annotation not available	0.493
ENSODEP00000000096	ENSODEP00000009408	ENSODEP00000000096	ENSODEP00000009408	annotation not available	annotation not available	0.557
ENSODEP00000000096	ENSODEP00000015169	ENSODEP00000000096	ENSODEP00000015169	annotation not available	annotation not available	0.948
ENSODEP00000000096	ENSODEP00000026675	ENSODEP00000000096	ENSODEP00000026675	annotation not available	annotation not available	0.825
ENSODEP00000000096	NME8	ENSODEP00000000096	ENSODEP00000010810	annotation not available	NME/NM23 family member 8.	0.569
ENSODEP00000000096	PRDX5	ENSODEP00000000096	ENSODEP00000020250	annotation not available	Peroxiredoxin 5.	0.963
ENSODEP00000000096	SRXN1	ENSODEP00000000096	ENSODEP00000015156	annotation not available	Sulfiredoxin 1.	0.435
ENSODEP00000000096	TXNRD1	ENSODEP00000000096	ENSODEP00000016387	annotation not available	Thioredoxin reductase 1.	0.943
ENSODEP00000007110	CAT	ENSODEP00000007110	ENSODEP00000022847	annotation not available	Catalase.	0.442