STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vps4aVacuolar protein sorting-associated protein 4A; Belongs to the AAA ATPase family. (431 aa)    
Predicted Functional Partners:
VTA1
Vacuolar protein sorting-associated protein VTA1-like protein.
   
 0.997
Chmp1a
Charged multivesicular body protein 1a.
   
 0.985
GW7_13523
Charged multivesicular body protein 1b.
   
 0.985
Chmp2a
Charged multivesicular body protein 2a.
    
 0.955
CHMP6
Charged multivesicular body protein 6.
    
 0.955
Ist1
IST1-like protein.
   
 0.935
Chmp3
Charged multivesicular body protein 3.
   
 0.889
GW7_08152
Protein Njmu-R1.
    
 0.838
GW7_02980
Charged multivesicular body protein 2b.
   
 0.835
Chmp2b
Charged multivesicular body protein 2b.
   
 0.835
Your Current Organism:
Heterocephalus glaber
NCBI taxonomy Id: 10181
Other names: H. glaber, naked mole rat, naked mole-rat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.